Publications

Pre-prints and coming soon…

12. Jacobs A. & Elmer K.R. Alternative splicing and gene expression play contrasting roles in the parallel phenotypic evolution of a salmonid fish [PDF]. bioRxiv preprint, in review.

11. Salmón P.*, Jacobs A.*, Ahrén D, Biard C., Dingemanse N.J., Dominoni D., Helm B., Lundberg M., Senar JC, Sprau P., Visser M.E. & Isaksson C. (2020) Repeated genomic signatures of adaptation to urbanisation in a songbird across Europe [PDF]. bioRxiv preprint; in review. (*shared first authors)

10. Watson H., Powell D., Salmón P., Jacobs A. & Isaksson C. – Urbanisation is associated with modifications in DNA methylation in a small passerine bird. in review.

 

Peer-reviewed papers

2020                      

9. Jacobs A., Carruthers M., Yurchenko A., Gordeeva N.V., Alekseyev S.S., Hooker O., Leong J.S., Rondeau E.B., Koop B.F., Adams C.E. & Elmer K.R. Parallelism in eco-morphology and gene expression despite variable evolutionary and genomic backgrounds in a Holarctic fish [PDF]. PLOS Genetics, 16(4): e1008658. [previous preprint here]

8. Burgon J., Vieites D., Jacobs A., Weidt S., Gunter H., Steinfartz S., Burgess K., Mable B. & Elmer K.R. – Functional colour genes and signals of selection in colour polymorphic salamanders [PDF]. Molecular Ecology, 00:1–16.

2019                      

7. Jacobs A. & Therkildsen N.O. (2019) Excavating ghost footprints and tangled trees from modern genomes [PDF]. Molecular Ecology 28(14), 3287-3290. (News & Views article)

6. Jacobs A.*, Carruthers M.*, Eckmann R., Yohannes E., Adams C.E, Behrmann-Godel J.† & Elmer K.R.† (2019) Rapid niche expansion by selection on functional genomic variation after ecosystem recovery [PDF]. Nature Ecology and Evolution 3, 77–86. (*shared first authors, †corresponding authors)

2018                      

5. Jacobs A., Hughes M.R., Robinson P.C., Adams C.E., Elmer K.R. (2018). The genetic architecture underlying the evolution of a rare piscivorous life history form in brown trout after secondary contact and strong introgression [PDF]. Genes 9(280).

4. Jacobs A., Doran C., Murray D., Duffill Telsnig J., Laskowski K.L., Jones N.A.R., Auer S.K., Praebel K. (2018). On the challenges and opportunities facing fish biology: a discussion of five key knowledge gaps [PDF]. Journal of Fish Biology 92, 690–698

3. Jacobs A., De Noia M., Praebel K., Kanstad-Hanssen Ø., Paterno M., Jackson D., McGinnity P., Sturm, A., Elmer K.R., Llewellyn M.S.  (2018). Genetic fingerprinting of salmon louse (Lepeophtheirus salmonis) populations in the North-East Atlantic using a random forest classification approach [PDF]. Scientific Reports  8, 1203.

2017                      

2. Jacobs A., Womack R., Chen M., Gharbi K. & Elmer K.R.  (2017). Significant synteny and co-localisation of ecologically relevant quantitative trait loci within and across species of salmonid fishes [PDF]. Genetics 

2015                      

1. Recknagel H., Jacobs A., Herzyk P., & Elmer K. R.  (2015). Double-digest RAD sequencing using Ion Proton semiconductor platform (ddRADseq-ion) with nonmodel organisms [PDF]. Molecular Ecology Resources 15(6), 1316-1329.